Wednesday, February 22, 2012

OPRM1-mu Opioid receptor


Your data includes 127 SNPs on gene OPRM1, which is on chromosome 6.
MAF Source: 1000 Genomes
http://www.1000genomes.org/
TUESDAY FEBRUARY 14, 2012
February 2012 Updated Genotypes for Integrated Phase 1 Release


This February 2012  release represents a new improved set of phased genotypes for our integrated phase 1 variant release. This release contains SNPS, short INDELs and Deletions based on low coverage and exome sequencing data across 1092 individuals.


Please note the sites list has been filtered to remove a small number of indels which were discovered to have a high false positve rate. There is more information about this in the README 
ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20110521/README.phase1_integrated_release_version2_20120214
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OPRM1 154402201 rs6912029 G or T GG
MAF/MinorAlleleCount: T=0.061/133
OPRM1 154402389 rs1799972 C or T CC
MAF/MinorAlleleCount: T=0.068/149
OPRM1 154402490 rs1799971 A or G AG
MAF/MinorAlleleCount: G=0.189/414
OPRM1 154409860 rs514980 C or T TT
MAF/MinorAlleleCount: C=0.154/338
OPRM1 154410479 rs509544 C or T TT
MAF/MinorAlleleCount: C=0.156/341
OPRM1 154410691 rs4870266 A or G GG
MAF/MinorAlleleCount: A=0.093/203
OPRM1 154414130 rs607759 C or T CC
MAF/MinorAlleleCount: T=0.156/341
OPRM1 154414385 rs499796 A or G AA
MAF/MinorAlleleCount: G=0.238/521
OPRM1 154419618 rs3778146 C or T TT
MAF/MinorAlleleCount: C=0.113/248
OPRM1 154420845 rs3823010 A or G GG
MAF/MinorAlleleCount: A=0.112/244
OPRM1 154425351 rs3778150 C or T TT
MAF/MinorAlleleCount: C=0.132/288
OPRM1 154429999 rs6927269 G or T TT
MAF/MinorAlleleCount: G=0.108/236
OPRM1 154431672 rs4357147 A or G AA
MAF/MinorAlleleCount: G=0.018/40
OPRM1 154433062 rs1461773 A or G GG
dbSNP Orientation: Minus
dbSNP Genotype: CC
MAF/MinorAlleleCount: A=0.116/253
OPRM1 154433828 rs6923231 A or G GG
MAF/MinorAlleleCount: A=0.070/153
OPRM1 154434831 rs589046 C or T CC
MAF/MinorAlleleCount: T=0.305/668
OPRM1 154435373 rs3778151 C or T TT
MAF/MinorAlleleCount: C=0.166/364
OPRM1 154435577 rs3778153 A or C CC
MAF/MinorAlleleCount: A=0.110/240
OPRM1 154449660 rs563649 C or T CC
MAF/MinorAlleleCount: T=0.104/228
OPRM1 154451807 rs9479756 A or G GG
MAF/MinorAlleleCount: A=0.097/212
OPRM1 154452803 rs17174794 C or G CC
MAF/MinorAlleleCount: G=0.003/7
OPRM1 154452817 rs17174801 A or G AA
MAF/MinorAlleleCount: G=0.003/7
OPRM1 154454948 rs10485057 A or G AA
MAF/MinorAlleleCount: G=0.100/218
OPRM1 154455121 rs510587 A or G GG
MAF/MinorAlleleCount: A=0.032/71
OPRM1 154456068 rs9282821 A or C AC
MAF/MinorAlleleCount: A=0.401/877
OPRM1 154456139 rs540825 A or T AT
dbSNP Orientation: Minus
dbSNP Genotype: AT
MAF/MinorAlleleCount: A=0.127/277
OPRM1 154456256 rs675026 A or G AG
dbSNP Orientation: Minus
dbSNP Genotype: CT
MAF/MinorAlleleCount: A=0.241/528
OPRM1 154456266 rs562859 C or T CT
dbSNP Orientation: Minus
dbSNP Genotype: AG
MAF/MinorAlleleCount: C=0.277/605
OPRM1 154457127 rs660756 G or T GT
MAF/MinorAlleleCount: G=0.276/603
OPRM1 154459438 rs12203621 A or G GG
MAF/MinorAlleleCount: A=0.064/139
OPRM1 154459840 rs548646 C or T CT
MAF/MinorAlleleCount: T=0.296/648
OPRM1 154460107 rs3798683 A or G GG
MAF/MinorAlleleCount: A=0.192/421
OPRM1 154461748 rs679987 C or T TT
MAF/MinorAlleleCount: C=0.067/147
OPRM1 154463422 rs1323043 C or T CT
MAF/MinorAlleleCount: T=0.136/297
OPRM1 154464437 rs647192 A or G AG
MAF/MinorAlleleCount: G=0.136/297
OPRM1 154466013 rs9322447 A or G AG
MAF/MinorAlleleCount: A=0.441/966
OPRM1 154466180 rs619089 A or G AG
dbSNP Orientation: Minus
dbSNP Genotype: CT
MAF/MinorAlleleCount: G=0.296/647
OPRM1 154470229 rs650825 A or G AG
dbSNP Orientation: Minus
dbSNP Genotype: CT
MAF/MinorAlleleCount: A=0.166/364
OPRM1 154470394 rs650245 A or G GG
MAF/MinorAlleleCount: A=0.115/251
OPRM1 154477398 rs9478506 G or T GG
MAF/MinorAlleleCount: T=0.088/193
OPRM1 154477679 rs606148 A or C CC
MAF/MinorAlleleCount: A=0.072/157
OPRM1 154478944 rs632395 A or G GG
MAF/MinorAlleleCount: A=0.101/220
OPRM1 154482434 rs671531 A or G AG
MAF/MinorAlleleCount: A=0.279/610
OPRM1 154483556 rs558948 C or T CT
MAF/MinorAlleleCount: T=0.163/357
OPRM1 154483822 rs645027 A or G AA
dbSNP Orientation: Minus
dbSNP Genotype: GG
MAF/MinorAlleleCount: G=0.129/283
OPRM1 154484971 rs613341 C or T CC
MAF/MinorAlleleCount: T=0.072/157
OPRM1 154486907 rs10485058 A or G AA
MAF/MinorAlleleCount: G=0.099/217
OPRM1 154491542 rs613355 A or C AC
MAF/MinorAlleleCount: C=0.272/595
OPRM1 154493504 rs649840 A or C CC
MAF/MinorAlleleCount: A=0.147/321
OPRM1 154494178 rs636433 A or G GG
dbSNP Orientation: Minus
dbSNP Genotype: CC
MAF/MinorAlleleCount: A=0.076/166
OPRM1 154496957 rs7774038 C or T TT
MAF/MinorAlleleCount: C=0.051/111
OPRM1 154497880 rs686633 C or T CT
MAF/MinorAlleleCount: T=0.128/281
OPRM1 154499185 rs544093 G or T TT
MAF/MinorAlleleCount: G=0.086/189
OPRM1 154499899 rs2010884 A or G GG
MAF/MinorAlleleCount: A=0.225/493
OPRM1 154500548 rs655059 C or T TT
MAF/MinorAlleleCount: C=0.056/122
OPRM1 154502815 rs13203628 A or G AG
MAF/MinorAlleleCount: G=0.216/472
OPRM1 154502966 rs12660296 C or T CT
MAF/MinorAlleleCount: C=0.216/472
OPRM1 154503514 rs13193545 C or T TT
MAF/MinorAlleleCount: C=0.098/215
OPRM1 154503778 rs9397687 C or T CT
MAF/MinorAlleleCount: T=0.416/910
OPRM1 154504070 rs518596 A or G GG
dbSNP Orientation: Minus
dbSNP Genotype: CC
MAF/MinorAlleleCount: G=0.366/800
OPRM1 154504084 rs10223804 A or G GG
MAF/MinorAlleleCount: A=0.079/173
OPRM1 154504746 rs6557337 C or T CT
MAF/MinorAlleleCount: T=0.426/931
OPRM1 154506022 rs569284 A or C AA
dbSNP Orientation: Minus
dbSNP Genotype: TT
MAF/MinorAlleleCount: C=0.086/188
OPRM1 154506891 rs12207811 C or T CC
MAF/MinorAlleleCount: T=0.157/344
OPRM1 154508510 rs4869817 A or G AG
MAF/MinorAlleleCount: G=0.455/995
OPRM1 154511909 rs9397178 A or G AA
MAF/MinorAlleleCount: G=0.162/354
OPRM1 154512887 rs13196610 A or G AA
MAF/MinorAlleleCount: G=0.046/100
OPRM1 154514019 rs4870268 C or T TT
MAF/MinorAlleleCount: C=0.405/887
OPRM1 154516563 rs9383693 C or T CC
MAF/MinorAlleleCount: C=0.467/1022
=====================================================
Interaction Protein for Cytohesin Exchange Factors 1 
(IPCEF1) Binds Cytohesin 2 and Modifies Its Activity
http://www.jbc.org/content/278/44/43460.full
=====================================================

OPRM1 154517641 rs17085103 G or T TT
MAF/MinorAlleleCount: G=0.061/134

OPRM1 154518220 rs9479767 C or T TT
MAF/MinorAlleleCount: T=0.470/1029
OPRM1 154519605 rs17277929 C or T TT
MAF/MinorAlleleCount: C=0.098/215
OPRM1 154520132 rs2236256 A or C CC
MAF/MinorAlleleCount: C=0.471/1030
OPRM1 154520428 rs6916787 A or G GG
MAF/MinorAlleleCount: A=0.061/133
OPRM1 154523086 rs1950005 A or G GG
MAF/MinorAlleleCount: G=0.476/1042
OPRM1 154523859 rs1918760 C or T CC
MAF/MinorAlleleCount: C=0.265/579
OPRM1 154523921 rs1918761 C or T TT
dbSNP Orientation: Minus
dbSNP Genotype: AA
MAF/MinorAlleleCount: T=0.265/579
OPRM1 154524838 rs9479769 G or T TT
MAF/MinorAlleleCount: G=0.387/846
OPRM1 154527332 rs12199124 A or G GG
MAF/MinorAlleleCount: A=0.164/358
OPRM1 154529113 rs2281617 C or T CC
MAF/MinorAlleleCount: T=0.238/520
OPRM1 154529487 rs6939625 A or G GG
MAF/MinorAlleleCount: A=0.090/198
OPRM1 154529669 rs6941251 C or T CC
MAF/MinorAlleleCount: C=0.353/773
OPRM1 154532350 rs6938037 A or C AA
MAF/MinorAlleleCount: A=0.246/538
OPRM1 154532829 rs12208947 A or G no call
MAF/MinorAlleleCount: A=0.216/473
OPRM1 154534546 rs7745499 A or C AA
MAF/MinorAlleleCount: A=0.350/765
OPRM1 154541831 rs13437608 C or T C
MAF/MinorAlleleCount: T=0.056/122
OPRM1 154542817 rs17278409 C or T CC
MAF/MinorAlleleCount: T=0.177/387
OPRM1 154543825 rs9479778 C or T TT
MAF/MinorAlleleCount: C=0.012/27
OPRM1 154544380 rs9479779 A or G AA
MAF/MinorAlleleCount: G=0.049/108
OPRM1 154545204 rs11965988 C or T TT
MAF/MinorAlleleCount: C=0.076/166
OPRM1 154545564 rs9371331 A or G AA
MAF/MinorAlleleCount: G=0.202/441
OPRM1 154545712 rs9479780 C or T TT
MAF/MinorAlleleCount: T=0.346/756
OPRM1 154554189 rs7452342 C or T TT
MAF/MinorAlleleCount: T=0.266/583
OPRM1 154554890 rs4626436 A or G GG
MAF/MinorAlleleCount: A=0.080/175
OPRM1 154557793 rs10485060 A or C CC
MAF/MinorAlleleCount: A=0.087/191
OPRM1 154558954 rs11970612 A or C AA
MAF/MinorAlleleCount: C=0.081/178
OPRM1 154560330 rs1040822 G or T TT
MAF/MinorAlleleCount: G=0.331/725
OPRM1 154562084 rs2295676 A or G AA
MAF/MinorAlleleCount: A=0.230/503
OPRM1 154564353 rs9322451 A or G GG
MAF/MinorAlleleCount: A=0.324/708+
OPRM1 154564432 rs1852629 C or T TT
MAF/MinorAlleleCount: T=0.340/745
OPRM1 154569846 rs6557339 C or T CC
MAF/MinorAlleleCount: C=0.245/536
OPRM1 154571206 rs9479791 C or T CC
MAF/MinorAlleleCount: T=0.182/399
OPRM1 154572672 rs6913456 A or G GG
MAF/MinorAlleleCount: G=0.417/912
OPRM1 154576104 rs790252 A or G AA
MAF/MinorAlleleCount: A=0.183/400
OPRM1 154576968 rs9478525 A or G GG
MAF/MinorAlleleCount: A=0.060/132
OPRM1 154577270 rs9478526 A or C AA
MAF/MinorAlleleCount: C=0.064/141
OPRM1 154581998 rs790262 A or G GG
MAF/MinorAlleleCount: G=0.486/1063
OPRM1 154584183 rs2272381 A or G AA
MAF/MinorAlleleCount: G=0.186/408
OPRM1 154585010 rs12205120 G or T GG
MAF/MinorAlleleCount: T=0.146/319
OPRM1 154590121 rs2103277 G or T GG
MAF/MinorAlleleCount: G=0.266/581
OPRM1 154592545 rs9397697 A or G AA
MAF/MinorAlleleCount: A=0.179/392
OPRM1 154592810 rs12212773 A or G AA
MAF/MinorAlleleCount: G=0.153/335
OPRM1 154593899 rs9371781 A or C CC
MAF/MinorAlleleCount: C=0.278/609
OPRM1 154596299 rs17292684 A or C AA
MAF/MinorAlleleCount: C=0.033/72
OPRM1 154602029 rs6935927 C or T CC
MAF/MinorAlleleCount: C=0.345/755
OPRM1 154605345 rs9479796 G or T TT
MAF/MinorAlleleCount: G=0.381/834
OPRM1 154607027 rs4314511 A or G AA
MAF/MinorAlleleCount: G=0.261/570
OPRM1 154608434 rs11155954 G or T GG
MAF/MinorAlleleCount: T=0.175/382
OPRM1 154608539 rs7754313 G or T GG
MAF/MinorAlleleCount: T=0.020/43
OPRM1 154609076 rs9383697 C or T CC
MAF/MinorAlleleCount: C=0.227/497
OPRM1 154609368 rs7759388 A or G GG
MAF/MinorAlleleCount: A=0.099/216

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